Funded Research

Principal Investigator: Russell Pachynski, MD

Co-PI: Daniel Thorek, PhD

Goal: To determine the recommended phase 2 dose of an immunotherapy treatment for metastatic castrate-resistant prostate cancer that combines a protein called N-803 with a Food and Drug Administration (FDA)-approved cellular immunotherapy called sipuleucel-T (Provenge). Researchers hypothesize that the combination will have an acceptable safety profile and will be feasible to administer in this population.

Description: Immunotherapy is an emerging treatment platform for cancer patients that can be highly effective. However, only a subset of patients demonstrates long-term responses. A persistent challenge has been how to identify patients that would benefit, and how to enhance immunological treatments to benefit more patients. This proposal addresses these critical issues by:

• Combining two immunotherapies that the researchers have shown work together in preclinical models
• Advancing a promising functional scanning technology to noninvasively characterize the immune response in these patients

Prostate cancer is the second most diagnosed cancer in males. Surgery or radiation can be curative when treated early and localized to the prostate; however, it is incurable once it has spread. Novel modes of treatment are needed. The researchers propose to combine Sipuleucel-T, an FDA-approved adoptive cell therapy for prostate cancer with modest outcomes, with N-803, an immunostimulatory engineered protein that binds to interleukin-15, a cytokine involved in activating immune cells. N803 has recently been FDA-approved for bladder cancer. The researchers will establish optimal dose and schedule for this new combination approach across three treatment cohorts. They will study the immune responses in blood, and use novel, functional noninvasive imaging of the active immune system using a novel radiotracer (specific for an immune mediator called granzyme-B). Together, this work is immediately impactful to men with prostate cancer and expands the horizons for the improved understanding of how the immune system responds to and may guide treatment.

Principal Investigator: Nicole Brossier, MD, PhD

Goal: To improve the outcomes for brain tumors in children. This proposal aims to determine how different dietary components (fat and sugar) affect tumor formation, epidermal growth factor (EGF) levels and epidermal growth factor receptor (EGFR) signaling in a murine model of pediatric brain tumor formation, and then to determine whether inhibition of EGFR prevents diet-accelerated tumor formation in this model. This information will be used to improve dietary counseling in patients and to design subsequent studies testing the benefits of risk-adapted therapeutic strategies in children with brain tumors and poor dietary exposure.

Description: As we enter into an era of precision pediatric oncology, it is becoming increasingly important to identify the factors that underlie the risk of brain tumor development. This challenge is particularly relevant for individuals with cancer predisposition syndromes like NF1, where 15-20% of children born with a germline NF1 gene mutation develop optic pathway gliomas (OPGs). Our inability to provide accurate risk assessment information for these young children leads to frequent sedated neuroimaging, suboptimal visual screening and delays in instituting treatment for those at greatest risk. The researchers recently performed pre-clinical studies that found exposure to an unhealthy, obesity-promoting diet (obesogenic diet, Ob) increased the likelihood of OPG development in NF1 mouse models. They also identified that these animals have much higher levels of epidermal growth factor (EGF) in their blood. Based on these observations, as well as findings that a high-fat diet drives tumor formation in other tumor types through activation of the EGF receptor (EGFR), the researchers hypothesize that high dietary fat intake drives NF1-OPG formation through increased EGFR signaling. In this grant, they propose to perform a detailed analysis of how different diets (high-fat, high-sugar or high-fat, high-sugar) affect NF1-OPG formation and how this correlates with circulating EGF levels. They will then inhibit EGFR through genetic and pharmacologic means in Ob-diet-driven NF1-OPG to determine whether this impairs tumor formation. Taken together, these experiments will determine how dietary composition affects tumor formation and the role of EGF in this process. This will provide a foundation for future investigations to determine whether EGF may be used as a biomarker to detect children at higher risk of NF1-OPG due to dietary exposure and to ascertain whether EGFR-directed therapy could be a useful addition to the existing treatment strategy of NF1-OPG in children with poor diets.

Principal Investigator: John DiPersio, MD, PhD

Goal: To improve anti-CD19 chimeric antigen receptor T cell (CART19) therapy for patients with relapsed or refractory large B-cell lymphoma (r/r LBCL). Currently, long-term disease-free survival with commercial CART19 in r/r LBCL is only about 40%, so more strategies to improve the efficacy of CART19 are warranted.

Description: Diffuse large B-cell lymphoma (DLBCL) is a common type of fast-growing non-Hodgkin lymphoma. In about 33% of patients, DLBCL returns after the first treatment (relapsed DLBCL), or the first treatment is not effective and the patient is not cured (refractory DLBCL). The FDA has approved three chimeric antigen receptor T-cell (CAR-T) therapies for use in adults with relapse or refractory DLBCL. T cells are a part of the immune system and help protect the body from infection and cancer. CAR-T therapy involves engineering healthy T cells to attack cancer cells. Unfortunately, about 50% of patients treated with CAR-T cells will relapse again with DLBCL within eight months. Interleukins are a type of protein that help activate our immune system to fight infections and cancer. Three interleukins named IL-7, IL-15, and IL-21 are especially effective at helping T cells survive, proliferate and kill infected cells. In this proposal, the researchers are testing if IL-7, IL-15 and IL-21 can help CAR-T cells kill DLBCL. Since interleukins are very short-lived and only last for one to two hours, they are testing novel long-acting versions of IL-7, IL-15 or IL-21 that last two to three days in humans. In part 1 of their proposal, the researchers are performing a clinical trial to determine if a drug named NT-I7, which is a long-acting version of IL-7, is safe and effective in helping CAR-T cells kill DLBCL tumors. In part 2, they are testing a new compound named HCW9206 that merges IL-7, IL-15 and IL-21 into a single long-acting drug. Their studies with HCW9206 will test its safety and ability to help CAR-T cells kill DLBCL in mice.

Principal Investigator: Yoon-A Kang, PhD

Goal: To identify a treatment for a broad range of myeloproliferative neoplasms (MPNs) independent of individual mutations. This project will focus on cells called multipotent progenitor 3 (MPP3), the expansion of which are common in a range of MPNs, and will investigate whether the process of controlling MPP3 blood cell production mechanisms can be targeted to regulate the excessive production of myeloid cells and form the foundation of a future therapy.

Description: Myeloproliferative neoplasms (MPNs) are a group of diseases characterized by too many white blood cells, red blood cells or platelets in the bone marrow. There are several well-known disease-causing mutations, and researchers have targeted these mutations to develop treatments. Although targeted therapies have revolutionized MPN treatment, they are not curative in most cases as the mutant cell population driving disease development and recurrence is usually not eradicated. However, their success in controlling disease development and progression has shown the clinical importance of normalizing blood production in disease contexts. Additionally, there are patients without known driver mutations, with no targetable driver mutations or who develop resistance to targeted therapies. Therefore, a better understanding of the mechanisms underlying myeloid cell expansion, a shared feature of various MPNs, is necessary to develop new treatments to be used in combination with current targeted therapies or as alternatives for patients who are ineligible for current therapies. The goal of this study is to find a treatment that is applicable to a broad range of MPNs independent of individual mutations. The researchers’ previous work found there is a specific immature bone marrow population, called multipotent progenitor 3 (MPP3), that can generate white blood cells, red blood cells and platelets. Importantly, MPP3 is expanded in various MPN mouse models regardless of their driver mutations. Interestingly, distinct MPP3 subsets are specifically increased corresponding to the overproduced mature cell types in MPNs. This indicates that controlling the production of different MPP3 subsets can regulate disease development and progression irrespective of disease-causing mutations. For this project, the researchers propose to study two commonly dysregulated pathways in human blood malignancies to control the production of distinct MPP3 subsets. Their study will provide insights into the common mechanism underlying MPN development and foundations to develop broadly applicable therapeutic interventions.

Principal Investigator: Kiran Mahajan, PhD

Co-PI: Nupam Mahajan, PhD

Goal: To demonstrate that a protein called HOXB13 can be targeted to treat prostate cancer with novel combination therapies. The study will benefit African American patients expressing increased HOXB13 through genetic and epigenetic mechanisms.

Description: Prostate cancer disproportionately affects African American men compared to white men. Recently, a HOXB13 variant (X285K) predisposing to prostate cancer in men of West African ancestry was reported in a large-scale germline genetic testing. HOXB13-X285K was significantly enriched in self-reported Black (1.01%;~21000 men screened) versus white (0.01%) patients. HOXB13-X285K carriers tended to have more aggressive disease, due to increased protein stability that resulted in an increase in cell proliferation. Besides germline mutations, gain-of-function modification in HOXB13 bump up HOXB13 RNA and protein levels. Thus, screening for HOXB13 expression and development of effective treatments is critical to improve clinical outcomes. Prostate-Specific Membrane Antigen-Targeted Imaging (PSMA-PET) imaging could be combined with molecular profiling of prostate biopsies for HOXB13 expression in white and African American patients for early detection and treatment of aggressive prostate cancers.

Results from this study will reveal previously unknown epigenetic regulation of immune suppression in prostate cancer. The researchers’ pre-clinical studies will advance the use of other checkpoint inhibitors alone or in combination with PD-L1/PD-1 axis to overcome poor response to immunotherapy. The results will provide the basis for combination therapies to improve treatment outcomes for prostate cancer patients.

Principal Investigator: Laura Schuettpelz, MD, PhD

Goal: To determine how the gene called Stathmin 1 (Stmn1) regulates hematopoietic stem cell (HSC) metabolism and contributes to hematopoietic malignancies, especially leukemia. The researchers predict that high levels of Stmn1 support the needs of growing leukemic cells, and that it may be a new therapeutic target on which to focus.

Description:The gene stathmin 1 (Stmn1) is expressed at high levels in normal blood stem cells and is overexpressed in blood cancer cells. The researchers’ preliminary studies suggest that Stmn1 is important for supporting various aspects of healthy blood stem cell metabolism, including maintaining healthy mitochondria and protein turnover in the cell. They predict that high levels of Stmn1 in leukemia cells are necessary to sustain the unique metabolic needs of leukemia cells. The proposed studies will determine the mechanisms by which Stmn1 influences blood stem cell metabolism, and in future studies researchers will determine whether inhibition of Stmn1 impairs the growth of leukemic blood cells. Ultimately, these studies will test Stmn1 as a novel therapeutic target to treat leukemia. As Stmn1 is overexpressed on multiple types of blood cancers, and loss of Stmn1 in mouse models has few effects outside of the blood system, the researchers predict that Stmn1-directed drugs could be useful to treat a wide variety of leukemias with limited side effects.

Principal Investigator: Stephen Sykes, PhD

Goal: To identify molecular pathways that support chemotherapy resistance in acute myeloid leukemia (AML) and utilize that information to identify potential new therapeutic targets. This proposal will specifically focus on a protein called DNA-Damage Induced Transcript 4 (DDIT4) that the researchers hypothesize supports AML cell survival and chemotherapy resistance and will establish that targeting this protein in a certain pathway will have therapeutic potential for leukemia patients.

Description: Annually, approximately 1 in 12,500 Americans are diagnosed with acute myeloid leukemia (AML), and more than 12,000 die from the disease. The overall survival rate of AML patients is below 25% for adults and 70% for children, and these poor outcomes are largely due to high rates of resistance to the current standard-of-care treatments and disease relapse. The researchers have discovered that a protein called DDIT4 (DNA-Damage Induced Transcript 4) may play a central role in how AML cells evade current chemotherapies. This project will decipher the molecular mechanisms by which DDIT4 promotes chemotherapy resistance as well as test whether pharmacological targeting of DDIT4 enhances the anti-leukemia effects of current chemotherapies.

Principal Investigator: Alessandro Vindigni, PhD

Co-PI: Sergej Djuranovic, PhD

Goal: To study early detection strategies for breast and ovarian cancer in women with BRCA1 or BRCA2 gene mutations and research molecularly guided and nonsurgical interventions to prevent tumor development.

Description: More than 1 in 500 women are affected by mutations in the breast cancer susceptibility genes BRCA1 or BRCA2. While it is known that these women have up to an 80% risk of developing breast and ovarian cancer in their lifetime, exactly why these cells become cancerous is unknown. The only preventive options currently available are risk-associated prophylactic surgeries of ovary/fallopian tube and breast removal, which result in surgical menopause and significant aesthetic consequences. Therefore, two major challenges that women with BRCA1 or BRCA2 gene mutations currently face are the lack of:

• Early detection strategies to identify which carriers will develop these malignancies
• Molecularly guided and nonsurgical strategies to prevent breast and ovarian tumor development

This project joins experts in DNA replication (Alessandro Vindigni, PhD), RNA processing (Sergej Djuranovic, PhD), and ovarian cancer (Mary Mullen, MD, MSCI) to tackle these challenges. The researchers know that BRCA1 is important for DNA replication and it helps protect the genome. Women with mutations in the BRCA1 gene have less BRCA1 protein in their cells. The researchers believe this lack of BRCA1 protein causes problems with DNA replication. These problems lead to more mutations in the genome, which can cause cells to become cancerous. They will test these new ideas using fallopian tube cells, new technologies from the Vindigni lab, and samples from patients. Next, they will use a technology developed by the Djuranovic lab called “antisense oligonucleotides” to increase BRCA1 protein levels. The researchers think that by increasing this protein, they can stop the unstable replication forks and prevent mutations that cause these cancers. Collectively, their studies will:

• Define the early changes that happen when normal fallopian tube cells with BRCA1 gene mutations turn into tumors
• Establish novel nonsurgical strategies to prevent ovarian cancer development in women with BRCA1 gene mutations

Principal Investigator: Matthew Walter, MD

Goal: To begin developing a new way to treat patients suffering from myelodysplastic syndrome, or MDS, by understanding how blood cells with mutations grow and expand. This project will test the safety and efficacy of selectively eliminating mutated blood cells by hyperactivating a pathway that reduces their growth, which could improve patients’ lives.

Description: Myelodysplastic syndromes (MDS) are one of the most common types of blood cancer in adults. MDS patients suffer from problems related to low blood counts, including life-threatening infections and bleeding. Once MDS develops, the only cure is a bone marrow transplant. However, most patients are not eligible for a transplant due to their advanced age and other illnesses. Understanding how MDS develops may help researchers identify new ways to treat patients with MDS.

Up to half of MDS patients have mutations in genes in their blood cells that regulate how RNA is stitched together in a cell, called RNA splicing. A goal of this project is to understand how blood cells with a gene mutation that controls RNA splicing grow, expand and cause MDS. The researchers observed that early after a cell gets an RNA splicing gene mutation, mutant cells grow slower than normal cells. However, over time, a mutated cell changes and outgrows normal cells, causing MDS and other blood cancers. The researchers are studying what happens early after a mutation occurs in a blood cell so they can identify ways to kill cells with the mutation.

Their initial studies identified a pathway in mutant blood cells that they can hyperactivate to preferentially kill mutated cells in a culture dish. The researchers now want to test if they can kill mutant cells in preclinical models and see if it is safe. If this works, they could design a trial to test if a new approach could kill mutated MDS cells in patients and improve their lives.

Principal Investigator: Tanner Johanns, MD, PhD

Goal: To determine if adding an immune boosting agent, called a PD-1 inhibitor, to a personalized cancer vaccine improves immune responses in patients with newly diagnosed glioblastoma, the deadliest brain tumor in adults.

Description: Glioblastoma is the deadliest brain tumor in adults with limited treatment options. To date, therapies that aim to induce the patients' own immune response to cancer cells have not been effective in glioblastoma for unclear reasons. Understanding why immune therapies are ineffective and how to overcome these barriers is the primary focus of our laboratory. To this end, we recently completed a study targeting neoantigens, proteins derived from mutations unique to each patient tumor, using a robust discovery pipeline, called pVac-Seq, developed at Washington University. Neoantigens were incorporated into a DNA vaccine platform and administered to patients after completion of radiation. Preliminary results showed successful induction of immune responses to neoantigens after vaccination with some long-term survivors. Based on these encouraging results, this present study will combine personalized neoantigen DNA vaccines with another immune boosting agent, termed a PD-1 inhibitor, which is approved for treatment in other cancers but has not been effective in glioblastoma. The goal of this study is to determine if the combination of neoantigen vaccine with PD-1 inhibition improves the immune response to vaccine-encoded neoantigens in patients with newly diagnosed glioblastoma. Additionally, neoantigen vaccination in combination with PD-1 inhibition is being explored in more immune sensitive solid tumors like melanoma with the idea that induction of a neoantigen-specific immune response from the vaccine will improve response rates to PD-1 inhibition. Therefore, in addition to PD-1 inhibition improving the efficacy of the neoantigen vaccine, it is also possible that the administration of a neoantigen vaccine improves the response to PD-1 inhibition in glioblastoma. Together, we hope this combination therapy improves outcomes for patients with glioblastoma, and that the results of this study provide the necessary justification to continue developing this promising therapy for our patients with brain tumors, where there is a critical need for novel effective treatment options. Ultimately, if effective, we hope this combination therapy will be incorporated into the standard treatment regimen for patients with glioblastoma and serve as a backbone to explore other immune therapy strategies that could further improve outcomes in this patient population.

Principal Investigator: Maria Thomas, MD, PhD

Goal: To compare the toxicity and efficacy of 1 week of radiotherapy (SWIFT RT) versus 3 weeks of radiotherapy (RT) given to the breast and nodes, while also evaluating patient quality of life and breast cosmesis.

Description: For women with breast cancer which has spread to their lymph nodes, treatment often includes radiation (high energy x-rays focused on the breast and nodes to kill cancer cells which may have been left behind after surgery). This reduces the risk of cancer recurrence and improves a patient’s chance of surviving breast cancer. Traditionally, a course of breast cancer radiation required 5-6 weeks of daily treatments (Monday through Friday). Although each treatment takes about 15 minutes, daily appointments for 6 weeks can impact work, childcare, quality of life, and/or other obligations. Over time, shorter, more condensed courses of radiation (3 weeks) have been shown to be just as effective and just as well tolerated. When the 3 week schedule was studied in patients with cancer spread to the nodes, this was also effective and well tolerated. Recently, a trial called UK FAST FORWARD found that one week of radiation is just as effective and well tolerated, when compared to 3 weeks. However, in that trial, radiation was only given to the breast. Therefore, if cancer has spread to the nodes, 3 weeks remains standard. In this randomized trial (SWIFT RT), we will compare 3 week versus 1 week of radiation to the breast and nodes. Given this had excellent effectiveness and safety when given only to the breast, we expect similar results with the one week schedule in this trial. We will also evaluate patient quality of life and collect blood samples to study toxicities from treatment, in order to offer even more individualized patient care in the future. If one week of radiation to the breast and nodes is found to be effective and well-tolerated, this would be a huge impact for women with breast cancer and would improve worldwide access to care by reducing the length of treatment.

Principal Investigator: John Krais, PhD

Goal: To explore how DNA damage accumulates and is repaired in non-cancer cells carrying a BRCA1 mutation and address the exciting possibility that suppressing a DNA repair pathway called polymerase theta-mediated end joining (TMEJ) could eliminate the transformation of cells into a malignant state.

Description: Mutations in genes encoding the DNA damage response machinery, including BRCA1 and BRCA2, lead to a significantly elevated risk of ovarian and breast cancer development for individuals inheriting a mutant gene. Inheritance of a mutation from one parent is sufficient to trigger tumor formation, despite also receiving a functional, non-mutated (wild-type) gene copy from the other parent. These high-risk individuals, usually with a family history of cancer, are in dire need of new tumor prevention approaches. The development of cancer prevention strategies is precluded by a shockingly limited understanding of the process where normal cells undergo transformation to malignant cancers. In fact, cells with one wild-type and one mutant copy of the BRCA1 or BRCA2 genes demonstrate very mild differences, even in their DNA damage response capabilities, yet are susceptible to cancer development. To address this paradox, we developed a BRCA1 mutant transgenic mouse strain and derived cells with wild-type BRCA1 or a single mutant copy to recapitulate an inherited mutation. In preliminary experiments we found a subtle accumulation of DNA damage in cells with a mutant copy of BRCA1 but revealed a startling increase in the activation of a mutagenic backup DNA repair pathway, Polymerase Theta-mediated end joining (TMEJ). These potentially transformative results raise the possibility that TMEJ is responsible for the mutations (mutagenesis) required for tumor development. In this proposal, we explore how DNA damage accumulates and is repaired in non-cancer cells carrying a BRCA1 mutation and address the exciting possibility that suppressing TMEJ could eliminate the transformation of cells into a malignant state.

Principal Investigator: Stephanie Markovina, MD, PhD

Goal: To determine if small drug-like molecules can be designed to block the many protective effects that a certain protein called SERPINB3 has on cervical tumor cells, and whether this approach can sensitize cancer cells to chemoradiation therapy to a greater extent than normal cells to better treat the cancer while reducing the potential of treatment side effects.

Description: Cervical cancer is responsible for a large number of cancer deaths worldwide. The standard treatment is a combination of radiation and chemotherapy and has not changed for decades. Only recently have new treatments that stimulate the patient’s immune response against the cancer shown promise. These drugs, called immune checkpoint inhibitors (ICIs), appear to work well for a small proportion of patients, and which patients will benefit from the addition of this treatment is unknown. Additionally, why some patients do not respond to standard chemoradiation or ICIs is also unknown. We have discovered that a protein called SERPINB3 protects tumor cells from anticancer therapy. This protein appears to protect tumor cells directly by preventing cell death when treated with chemoradiation and other drugs, but also by influencing the immune cells within the tumor. Currently, there are no drugs that block the action of SERPINB3, and it is unclear if targeting SERPINB3 might also sensitize normal non-cancer cells to these therapies, increasing the risk of side effects. In order to address these gaps in knowledge, I propose two specific goals for this project: 1) determine if small molecules can specifically inhibit the protective effect of SERPINB3 on cervical tumor cells, and 2) if targeting of SERPINB3 sensitizes cancer cells to a greater extent than normal cells. To achieve these goals, we will employ novel tools we have developed to mimic conditions and treatments that are delivered to patients. Drug candidates we have identified through screening will be tested in these settings and fill the gap in knowledge about cervical cancer resistance and nominate new treatment approaches to improve survival from cervical cancer. While this proposal is focused on cervical cancer, the development of SERPINB3-targeting drugs may represent a personalized treatment approach for many patients with tumors that express SERPINB3, including lung cancer, head and neck cancer, and an aggressive brain tumor called glioblastoma, extending the reach of this research to an even greater number of patients.

Principal Investigator: Karla Washington, PhD

Goal: To enhance the well-being of the family caregivers of cancer hospice patients by implementing and evaluating modifications to the ENVISION digital health tool and conducting a rigourous feasibility pilot study.

Description: Each year, nearly half a million Americans with advanced cancer elect to receive hospice services when disease-directed therapies are no longer effective and life expectancy is limited. Most of these individuals receive hospice in the community with family members and friends managing their symptoms, often with little training or preparation. Symptom management challenges are common in hospice, and they are a significant source of patient and family caregiver distress. For the past several years, our team has worked with hospice providers and care recipients to co-create a digital health tool and corresponding intervention called ENVISION (ENgagement and Visualization to Improve Symptoms In ONcologic care). The ENVISION application converts patient- and family caregiver-reported symptom and well-being indicators into simple data visualizations, which are summarized in daily scorecards that provide hospice teams with comprehensive, yet easily interpretable assessment data to guide care planning and prioritization of clinical responses. We recently conducted an evaluation of ENVISION's digital inclusivity in preparation for a large, multi-site trial. Evaluation results highlighted two modifications that, if implemented, would significantly increase ENVISION's usablity and potential benefit for diverse groups of patients and family caregivers: (1) simplifying the onboarding experience to make it easier for users with low digital literacy to log in to the application the first time, and (2) providing additional training to help family caregivers assess patient symptoms, particularly in more advanced disease stages. In this application, we propose a two-year study that will allow us to implement and evaluate these modifications and conduct a rigorous feasibility pilot study. At the conclusion of the proposed research, our team will be well-positioned to pursue robust external support for a large-scale, multi-site clinical trial of ENVISON, which we hypothesize will decrease family caregivers' distress and improve management of patient symptoms in home hospice care.

Principal Investigator: Jingyu Xiang, MD, MSCI

Co-PI: John DiPersio, MD, PhD

Goal: To utilize a genetic tool called CRISPR to generate more effective CAR-T cell therapy against tumor cells and to generate healthy immune cells that are resistant to CAR-T cell attacks. This would promote the killing of T-cell acute lymphoblastic leukemia (T-ALL) cells while preserving the immune system.

Description: T cell acute lymphoblastic leukemia (T-ALL) is an aggressive blood cancer arising in T cells, an important component of the immune system. Patients with T-ALL who relapse have a poor prognosis, with a five-year survival rate of less than ten percent. Chimeric antigen receptor T cell (CAR-T) therapy is a promising treatment that involves engineering healthy T cells to attack cancer cells. However, the marker that CAR-T cells use to recognize and kill T-ALL is also expressed on themselves and other healthy immune cells. This causes CAR-T cells to attack each other (fratricide) or healthy immune cells, which leads to poor CAR-T function and immunodeficiency. In this study, we will develop a novel CAR-T therapy that targets CD2, a surface marker expressed on both T-ALL and healthy T cells. To prevent CAR-T cells from killing themselves and instead focusing on attacking cancer cells, we will use a genetic tool called CRISPR to mask the CD2 marker on CAR-T cells, so they are not recognizable by the CAR-T cells. By applying this genetic tool to hematopoietic stem cells, which give rise to all the cells in the blood, we can generate healthy immune cells that are resistant to unwanted killing by CAR-T cells, therefore preserving the immune system. We hope this novel immunotherapeutic approach will thus promote T-ALL killing while preserving a healthy immune system.

Principal Investigator: Hanwen Zhang, PhD

Goal: Advance a next generation theranostic pair with a novel compound, 89Zr/227Th-Lumi-PSMAUrea, for targeting imaging and alpha particle therapy of metastatic prostate cancer.

Description: Prostate cancer (PCa) is the most common non-cutaneous malignancy diagnosed in men and is their second leading cause of cancer death. Over 90 percent of these cancer cells overexpress a cell-surface protein, prostate specific membrane antigen (PSMA). Radiopharmaceuticals that target PSMA can be used to sensitively detect and characterize PCa, as well as direct cancer-specific radiation to sites throughout the body. The FDA has recently approved several PSMA-agents for imaging and targeted therapy. However, the overall survival extension of Lutetium-177 labeled therapeutics is only four months, due to the low absorbed dose at sites of disease from this low energy beta particle emitter. By developing a next generation theranostic pair with a novel compound, 89Zr/227Th-Lumi-PSMAUrea, which enables sensitive and high contrast PET imaging with 89Zr and exquisitely potent high-absorbed dose alpha particle therapy with 227Th, we seek to generate further safety and efficacy data in order to translate 89Zr-Lumi-PSMAUrea for first-in-man studies. 89Zr-Lumi-PSMAUrea PET imaging will precisely guide and predict 227Th-Lumi-PSMAUrea therapy to eradicate prostate malignancy.

Principal Investigator: Elizabeth Salerno, PhD, MPH

Goal: Determine the feasibility and preliminary efficacy of a physical therapist-delivered prehabilitation physical activity intervention to prevent cognitive decline in breast cancer patients undergoing chemotherapy, hopefully leading to a significant paradigm shift in the way we implement standard of care rehabilitation during cancer survivorship.

Description: Despite chemotherapy’s effectiveness at treating breast cancer, many patients experience severe declines in cognitive function during treatment that can persist for years. Our team’s previous research suggests that regular physical activity may help, but randomized controlled trials are necessary to confirm these findings. Our research also suggests that physical activity should begin as soon as possible after a cancer diagnosis, but most targeted physical activity interventions are designed to begin after chemotherapy completion, once cognition has already declined. Interventions delivered before or during treatment (e.g., prehabilitation) may be better suited to prevent treatment-related impairments and improve prognosis; however, these trials are difficult in practice. Oncologists have limited (if any) time to systematically advise patients on physical activity behavior, and patients are overwhelmed by a new cancer diagnosis and hesitant to begin activity on their own without proper support. Ideal models of cancer care should be pragmatic, which includes referral to physical activity programs through existing healthcare pathways to support enrollment, adherence, and long-term behavioral maintenance. To address these gaps, we propose to conduct a pilot randomized controlled trial exploring both the preliminary efficacy and feasibility of a remote, physical therapist-delivered prehabilitation physical activity intervention to prevent cognitive decline in breast cancer patients undergoing chemotherapy, compared with a wait-list control condition. Findings from this study will provide critical preliminary data for scaling our intervention to confirm the role of physical activity on cognitive function and implement pragmatic approaches to prehabilitation during treatment for breast cancer.

Principal Investigator: Jason Held, PhD

Goal: Address critical knowledge gaps in our functional and mechanistic understanding of how silencing the enzyme GSTP1 re-wires cysteine oxidation of the proteome in breast cancer, hopefully providing new ways to inhibit breast cancer growth and transformation.

Description: Glutathione S-transferase Pi 1 (GSTP1) is an enzyme that we find is uniquely and dramatically downregulated in luminal and some Her2-positive breast cancers, as well as liver and prostate cancers. This proposal will investigate how GSTP1 acts as a tumor suppressor via regulation of cysteine oxidation in proteins. This is a novel function for GTP1, so we will characterize its structure and role in cancer signaling.

Principal Investigator: Christopher Maher, PhD

Goal: Understand how our recently discovered lncRNA, RAMS11, interacts with a pioneering transcription factor to promote tumor growth and metastasis in non-small cell lung cancer patients.

Description: Lung cancer is the most common malignancy and has the highest mortality worldwide, with approximately 80-85 percent of all lung cancer patients categorized as being non-small cell lung cancer (NSCLC). Despite improvements in diagnosis and treatment options, currently only five percent of NSCLC patients with aggressive disease survive five years or longer. This represents an unmet clinical need to improve the current treatments. To address this, NSCLC research has primarily focused on understanding which genes that produce proteins, also known as protein-coding genes, have altered activity in tumor cells compared to normal cells. However, our lab recently discovered a novel class of genes that eluded researchers because, contrary to central dogma, they enable a cell to function without generating a protein (we refer to as long non-coding RNA [lncRNA] genes). Building on this discovery, our lab is focusing on how these understudied lncRNA genes enable a lung tumor to develop and eventually spread throughout the body (also known as metastases). More specifically, we recently discovered a lncRNA that becomes more active in lung cancer patients that have more aggressive disease. The current proposal will study how this lncRNA acts as a “master regulator” by interacting with specific proteins to alter their normal function and cause the original tumor to grow and spread. In the longer-term we intend to “drug” this lncRNA, ultimately leading to the development of novel therapeutics for improving outcomes in this deadly disease.

Principal Investigator: Roberto Galletto, PhD

Goal: Define the role of Pif1 in telomere maintenance in cancer cells and to identify small molecule inhibitors to test the functional outcome of Pif1 inhibition.

Description: One hallmark of cancer cells is their ability to maintain the ends of their chromosomes, in a special DNA structure called telomeres. This gives cancer cells the ability to replicate indefinitely. In general, telomere maintenance in cancer cells occurs via reactivation of a protein called telomerase, a specialized enzyme that extends the DNA length of telomeres. However, in about 10-15 percent of tumors, telomeres are maintained by a telomerase-independent pathway, termed Alternative Lengthening of Telomeres (ALT). As neither normal cells nor majority of tumors rely on ALT, specific inhibition of this pathway provides an attractive target for therapeutic intervention specifically tailored to ALT+ cancers. However, the mechanisms of ALT in human tumors and suitable targets for small molecule inhibition have remained elusive. To this end, we identify human Pif1, an enzyme that unwinds the DNA double helix and facilitates DNA replication at hard-to-replicate sites, as a candidate to be targeted for inhibition in ALT.

Principal Investigator: Ben Major, PhD

Goal: Test the pyrimenthamine drug as an inhibitor of the NRF2 protein in head and neck squamous cell carcinoma, which if proven true could result in the ability to sensitize NRF2-active cancers to standard of care chemotherapy, radiation therapy, and immune inhibition therapy.

Description: Patients suffering advanced head and neck squamous cell carcinoma (HNSCC) face poor prognoses and limited treatment options. Massive DNA sequencing efforts have revealed genes, that when mutated, contribute to HNSCC progression and resistance to chemotherapy and radiation therapy. Principle among these is the NRF2 gene, which for decades has been known to protect normal cells from stress and environmental toxins like air pollution and sun exposure. The evolution of a normal cell to a cancer cell is exceedingly stressful to cellular life, and as such, mutation and activation of NRF2 provides the growing cancer with critical survival capabilities. Moreover, HNSCC cancers with NRF2 mutations and activation have been shown to be resistant to front line chemotherapy, radiation therapy and immune-directed therapy. We recently discovered that the drug Pyrimethamine has an inhibitory effect on NRF2 activity in cell culture models and in mouse models. Mechanistically, we found that Pyrimethamine inhibits the dihydrofolate reductase (DHFR) enzyme, and that this results in inhibition of NRF2. Pyrimethamine is an FDA approved drug that has been used for decades for treatment of protozoan infections and malaria. A growing body of research shows that it has potential antitumor activity, however it has not been previously studied in HNSCC or specifically in the context of NRF2-active tumors. In this study of HNSCC patients with advanced disease, we will determine if Pyrimethamine treatment for two weeks results in loss of activity of DHFR and NRF2. If proven true, these data will support a near-future Phase 2 clinical study wherein we test whether Pyrimethamine sensitizes NRF2-active cancers to standard of care chemotherapy, radiation therapy, and immune inhibition therapy.

Principal Investigator: Aimilia Gastounioti, PhD

Goal: Our goal is to discover novel imaging phenotypes of breast cancer risk from mammography and bring effective personalized breast cancer risk models to more racially diverse screening populations.

Description: This is a study to learn whether a woman’s risk of developing breast cancer can be predicted by using computers to evaluate changes in her mammograms over time. Breast cancer risk is related to several factors, including having family members with breast cancer, certain changes in genes (mutations), and reproductive history (like number of children and breastfeeding history). Some previous studies have shown that a woman’s risk is associated with what her mammogram looks like when analyzed by a computer – looking at features of the image before a cancer is visible. However, most of these mammograms were from White women, and it is not known whether these same features can predict breast cancer risk in Black women. Because Black women are affected by more aggressive cancers that show up at younger ages, it would be particularly helpful to be able to predict breast cancer risk in this group of women. The previous studies have also looked only at features from a single mammogram. This study will look at changes in mammograms from year to year to find out whether risk can be better predicted from these changes. We will retrospectively analyze mammograms of both White and Black women in order to develop a computer program that will give a more accurate estimate of each woman’s individual risk of breast cancer, regardless of race. The ultimate goal is to improve our use of screening mammograms and lower risk of dying from breast cancer.

Principal Investigator: Ben Major, PhD

Goal: Test the pyrimenthamine drug as an inhibitor of the NRF2 protein in head and neck squamous cell carcinoma, which if proven true could result in the ability to sensitize NRF2-active cancers to standard of care chemotherapy, radiation therapy, and immune inhibition therapy.

Description: Patients suffering advanced head and neck squamous cell carcinoma (HNSCC) face poor prognoses and limited treatment options. Massive DNA sequencing efforts have revealed genes, that when mutated, contribute to HNSCC progression and resistance to chemotherapy and radiation therapy. Principle among these is the NRF2 gene, which for decades has been known to protect normal cells from stress and environmental toxins like air pollution and sun exposure. The evolution of a normal cell to a cancer cell is exceedingly stressful to cellular life, and as such, mutation and activation of NRF2 provides the growing cancer with critical survival capabilities. Moreover, HNSCC cancers with NRF2 mutations and activation have been shown to be resistant to front line chemotherapy, radiation therapy and immune-directed therapy. In this study of HNSCC patients with advanced disease, we will determine if Pyrimethamine treatment for two weeks results in loss of activity of DHFR and NRF2. If proven true, these data will support a near-future Phase 2 clinical study wherein we test whether Pyrimethamine sensitizes NRF2-active cancers to standard of care chemotherapy, radiation therapy, and immune inhibition therapy.

Principal Investigator: Ting Wang, PhD

Goal: Exploring Precision Oncology Opportunities Contributed by Transposable Elements

Description: We recently discovered that the drug Pyrimethamine has an inhibitory effect on NRF2 activity in cell culture models and in mouse models. Mechanistically, we found that Pyrimethamine inhibits the dihydrofolate reductase (DHFR) enzyme, and that this results in inhibition of NRF2. Pyrimethamine is an FDA approved drug that has been used for decades for treatment of protozoan infections and malaria. A growing body of research shows that it has potential antitumor activity, however it has not been previously studied in HNSCC or specifically in the context of NRF2-active tumors.

Principal Investigator: Hanwen Zhang, PhD

Goal: Advance a next generation theranostic pair with a novel compound, 89Zr/227Th-Lumi-PSMAUrea, for targeting imaging and alpha particle therapy of metastatic prostate cancer.

Description: Prostate cancer (PCa) is the most common non-cutaneous malignancy diagnosed in men and is their second leading cause of cancer death. Over 90 percent of these cancer cells overexpress a cell-surface protein, prostate specific membrane antigen (PSMA). Radiopharmaceuticals that target PSMA can be used to sensitively detect and characterize PCa, as well as direct cancer-specific radiation to sites throughout the body. The FDA has recently approved several PSMA-agents for imaging and targeted therapy. However, the overall survival extension of Lutetium-177 labeled therapeutics is only four months, due to the low absorbed dose at sites of disease from this low energy beta particle emitter. By developing a next generation theranostic pair with a novel compound, 89Zr/227Th-Lumi-PSMAUrea, which enables sensitive and high contrast PET imaging with 89Zr and exquisitely potent high-absorbed dose alpha particle therapy with 227Th, we seek to generate further safety and efficacy data in order to translate 89Zr-Lumi-PSMAUrea for first-in-man studies. 89Zr-Lumi-PSMAUrea PET imaging will precisely guide and predict 227Th-Lumi-PSMAUrea therapy to eradicate prostate malignancy.

Principal Investigator: Armin Ghobadi, MD

Goal: Our goal is to determine if adding the targeted oral drug duvelisib to standard treatment with genetically modified immune cells (chimeric antigen receptor or “CAR” T cells) will decrease cellular immunotherapy-related side effects and help CAR T cells to more effectively kill non-Hodgkin lymphoma.

Description: Non-Hodgkin lymphoma is the most common blood cancer in adults. It develops from the lymphatic glands, which form an important part of the immune system. Currently, the first treatment patients receive for this cancer is high doses of chemotherapy, which can cure about half of patients. However, if the lymphoma does not disappear after chemotherapy or comes back after treatment, additional chemotherapy treatments are unlikely to provide a cure. Physicians are increasingly interested in harnessing the body’s own immune system to help fight cancer, including lymphoma. One promising approach is the collection and modification of the patient’s own immune cells to make a special type of anti-cancer treatment called chimeric antigen receptor T cells or “CAR T cells”. These cells are specifically designed to find and destroy lymphoma cells after recognizing a specific protein on their surface. In prior studies, the use of CAR T cells has been shown to cure about a third of patients with NHL who were not cured by chemotherapy. Unfortunately, this therapy can have significant side effects that require hospitalization or admission to the intensive care unit, including fevers, confusion, difficulty breathing and low blood pressure. Further, the majority of patients are still not cured by this approach and most treatments are ineffective if the lymphoma comes back after receiving CAR T cell therapy. Consequently, our study proposes to use duvelisib, a medicine that can be taken by mouth, to improve the function of CAR T cells during treatment. Based on work in the laboratory, we believe it will decrease the side effects of CAR T cell treatment while helping CAR T cells to last longer and kill cancer cells better. With this approach, we hope to increase the number of patients who can safely receive CAR T cells and provide better control of the cancer, ultimately leading to more patients with lymphoma being cured.

Principal Investigator: Kian-Huat Lim, MD, PhD

Goal: Our goal is to improve the efficacy of treatment for patients with metastatic gastric and esophageal cancers by combining a new drug called CA-4948 with current chemo-immunotherapy treatments to activate killer T cells.

Description: Chronic inflammation is an important risk factor that leads to the development of gastrointestinal cancers including gastric, esophageal, pancreatic, and colon cancers. Under the microscope, we can easily observe that these cancers are heavily surrounded by inflammatory cells. These inflammatory cells secrete soluble factors that not only fuel cancer cell growth, but also block our bodies’ main immune defense mechanism, particularly the killer T cells. We have recently identified IRAK4, an enzyme within cancer cells, as a key target that drives chronic inflammation in gastrointestinal cancers. We found that blocking IRAK4 using a new drug called CA-4948 can dramatically decrease inflammatory cells inside the cancer of experimental mouse models, causing the killer T cells to be partly activated. When we added an immunotherapy agent called anti-PD1 antibody, we observed a further boost in killer T cell activity and number, which led to complete elimination of cancers in more than half of the experimental mice. This is an exciting finding that led us to open a new clinical trial for patients with metastatic gastric and esophageal cancers, in which chemotherapy and immunotherapy are already part of the regimen. Our hope is that adding CA-4948 will make these therapies more effective and last longer in patients. To our best knowledge, this is the first clinical trial that combines CA-4948 with chemo-immunotherapy in cancer patients. If shown to be effective from this study, we will proceed to open this clinical trial in a larger scale in collaboration with other cancer centers in the future.

Principal Investigator: Roberto Galletto, PhD

Goal: Define the role of Pif1 in telomere maintenance in cancer cells and to identify small molecule inhibitors to test the functional outcome of Pif1 inhibition.

Description: One hallmark of cancer cells is their ability to maintain the ends of their chromosomes, in a special DNA structure called telomeres. This gives cancer cells the ability to replicate indefinitely. In general, telomere maintenance in cancer cells occurs via reactivation of a protein called telomerase, a specialized enzyme that extends the DNA length of telomeres. However, in about 10-15 percent of tumors, telomeres are maintained by a telomerase-independent pathway, termed Alternative Lengthening of Telomeres (ALT).

Principal Investigator: Elizabeth Salerno, PhD, MPH

Goal: Determine the feasibility and preliminary efficacy of a physical therapist-delivered prehabilitation physical activity intervention to prevent cognitive decline in breast cancer patients undergoing chemotherapy, hopefully leading to a significant paradigm shift in the way we implement standard of care rehabilitation during cancer survivorship.

Description: Despite chemotherapy’s effectiveness at treating breast cancer, many patients experience severe declines in cognitive function during treatment that can persist for years. Our team’s previous research suggests that regular physical activity may help, but randomized controlled trials are necessary to confirm these findings. Our research also suggests that physical activity should begin as soon as possible after a cancer diagnosis, but most targeted physical activity interventions are designed to begin after chemotherapy completion, once cognition has already declined. Interventions delivered before or during treatment (e.g., prehabilitation) may be better suited to prevent treatment-related impairments and improve prognosis; however, these trials are difficult in practice. Oncologists have limited (if any) time to systematically advise patients on physical activity behavior, and patients are overwhelmed by a new cancer diagnosis and hesitant to begin activity on their own without proper support. Ideal models of cancer care should be pragmatic, which includes referral to physical activity programs through existing healthcare pathways to support enrollment, adherence, and long-term behavioral maintenance. To address these gaps, we propose to conduct a pilot randomized controlled trial exploring both the preliminary efficacy and feasibility of a remote, physical therapist-delivered prehabilitation physical activity intervention to prevent cognitive decline in breast cancer patients undergoing chemotherapy, compared with a wait-list control condition. Findings from this study will provide critical preliminary data for scaling our intervention to confirm the role of physical activity on cognitive function and implement pragmatic approaches to prehabilitation during treatment for breast cancer.

Principal Investigator: Sheila Stewart, PhD

Goal: Our goal is to develop smarter breast cancer therapies that have a more potent effect at limiting disease progression by interrogating how age-related changes in non-tumor cells contribute to increases in breast cancer.

Description: As neither normal cells nor majority of tumors rely on ALT, specific inhibition of this pathway provides an attractive target for therapeutic intervention specifically tailored to ALT+ cancers. However, the mechanisms of ALT in human tumors and suitable targets for small molecule inhibition have remained elusive. To this end, we identify human Pif1, an enzyme that unwinds the DNA double helix and facilitates DNA replication at hard-to-replicate sites, as a candidate to be targeted for inhibition in ALT.

Principal Investigator: Patricia Ribeiro Pereira, PhD

Goal: Our goal is to enhance the efficacy of immunotherapy treatments in gastric tumors. We aim to use molecular imaging techniques to investigate the mechanisms of cancer-cell surface protein regulation to enhance immune checkpoint blockade efficacy in gastric tumors.

Description: Cancer cells can become invisible to monoclonal antibody drugs (i.e., a form of immunotherapy) by decreasing the availability of cancer-cell surface proteins, which are the ones targeted by these drugs. We have recently shown that proteins present in high quantities in gastric cancer cells are not always available at the cell surface for the effective binding of antibody drugs. The processes by which proteins are distributed throughout the cancer cell and internalized from the cell membrane could explain why immunotherapies only work in 30% of patients with gastric cancer. Thus, there is a critical need to understand the biological mechanisms of cancer-cell surface protein regulation and develop approaches that allow effective control of these processes. The Disease Imaging and Therapy lab uses cutting-edge imaging technologies to visualize in the whole body and in real-time the biological processes by which proteins are internalized into the gastric cancer cell and away from the membrane where antibody drugs bind to them. We then develop pharmacologic approaches to control these processes in ways that enable the conversion of non-responder gastric cancers into responders. This proposal aims to use our imaging methodologies to discover the membrane trafficking mechanisms of PD-L1—an important membrane protein that prevents immune cells from destroying cancer cells—and determine whether PD-L1 trafficking can be modulated to enhance the efficacy of antibody drugs targeting PD-L1 in gastric cancers. These approaches will enhance antibody therapies targeting cell-surface receptors and increase the number of patients that benefit from them.

Principal Investigator: Chris Maher, PhD

Goal: Understand how our recently discovered lncRNA, RAMS11, interacts with a pioneering transcription factor to promote tumor growth and metastasis in non-small cell lung cancer patients.

Description: Lung cancer is the most common malignancy and has the highest mortality worldwide, with approximately 80-85 percent of all lung cancer patients categorized as being non-small cell lung cancer (NSCLC). Despite improvements in diagnosis and treatment options, currently only five percent of NSCLC patients with aggressive disease survive five years or longer. This represents an unmet clinical need to improve the current treatments. To address this, NSCLC research has primarily focused on understanding which genes that produce proteins, also known as protein-coding genes, have altered activity in tumor cells compared to normal cells. However, our lab recently discovered a novel class of genes that eluded researchers because, contrary to central dogma, they enable a cell to function without generating a protein (we refer to as long non-coding RNA [lncRNA] genes). Building on this discovery, our lab is focusing on how these understudied lncRNA genes enable a lung tumor to develop and eventually spread throughout the body (also known as metastases). More specifically, we recently discovered a lncRNA that becomes more active in lung cancer patients that have more aggressive disease. The current proposal will study how this lncRNA acts as a “master regulator” by interacting with specific proteins to alter their normal function and cause the original tumor to grow and spread. In the longer-term we intend to “drug” this lncRNA, ultimately leading to the development of novel therapeutics for improving outcomes in this deadly disease.

Principal Investigator: Melissa Mavers, MD, PhD

Goal: The goal is to improve existing cellular therapies as well as develop novel cellular therapies for malignant diseases by supporting the development of novel invariant natural killer T (iNKT) cell-based cancer-targeting therapies with enhanced safety and efficacy.

Principal Investigator: Bryan Sisk, MD, MSCI

Co-Investigator: Albert Lai, PhD

Goal: The goal is to develop cancer-specific and vascular anomaly-specific chatbots using a retrieval-augmented generation approach and assess the usefulness, quality and acceptability of these tools.

Principal Investigator: Jorge Di Paola, MD

Goal: The goal is to understand the biological significance of these genetic defects, and their potential impact on human disease.

Principal Investigator: Margaret Ferris, MD, PhD

Goal: The goal is to further understand the molecular mechanism of the retinoid receptor/COMPASS-like complex interaction as well as to develop pre-clinical data for a clinical trial of combination menin inhibitor and retinoids.